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Image Analysis Basics

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Course Title: 
Image Analysis - a Basic course

Course Overview

Microscope images play a crucial role in the investigations of biological systems. With the great advances in light microscopy driving the multi-dimensional imaging data, image processing and analysis becomes inevitable in modern life science research. By increasing the quantity and complexity of the microscopic (imaging) data, considered as a multidimensional numeric data, the advanced computational tools to analyse the data also increases. To extract the useful information from the image data, it is important to understand the basics of images, methods to process images and more importantly skills to use the software tools.

In this course we would discuss the basics of image properties, bioimage analysis, and efficient methods/tools to use, feature extraction with the complete hands on experience. This course will help the participant to build their optimum image analysis workflow for their own research problem

Topics to be covered

Module 1: Basics of Images/Imaging

Module 2: Image Inspection

Module 3: Intensity measurements & Background Subtraction

Module 4: Thresholding & Image Segmentation

Module 5: Colocalization

Module 6: Basic 3D quantitative image analysis

Module 7: Introduction to CellProfiler

Course Outcome

  • Familiarizing with digital images
  • Appropriate use of Fiji/ImageJ & CellProfiler
  • Correct choice of filtering methods based on the problem
  • Correct choice of quantitative measurements based on the requirements
  • Building optimized workflow.
Essential Requirement
Laptops with preinstalled Fiji ( in windows/Linux/Mac operating systems.

Target Audience

Graduate students, Post-docs and Faculty who need to analyse their own image data. Basic knowledge in handling microscopic imaging data. Programming knowledge not required!

Course Fee*

Academia - Rs. 5,000.00 plus GST@18% (Rs. 5,900.00 incl. GST)

Startups - Rs. 7,000.00 plus GST@18% (Rs. 8,260.00 incl. GST)

Industry - Rs. 10,000.00 plus GST@18% (Rs. 11,800.00 incl. GST)

*Fee doesn't include accommodation charges

For questions write to: ia2019 [AT] ccamp. res. in with subject line "Image Analysis Course" 


Wednesday, January 29, 2020 to Thursday, January 30, 2020
Last Date of Application: 
Wednesday, January 15, 2020
C-CAMP , GKVK Campus, Bellary Road, Bangalore 560065, KA, India