COVID-19 Response: Local Logistics National Effort

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COVID-19 Response: Local Logistics National Effort

Listed below are the Publications supported by Technology platforms at C-CAMP / Bangalore Life Science Cluster.

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Patra A, Kalita B, Chanda A, Mukherjee AK. 2017. Proteomics and antivenomics of Echis carinatus carinatus venom: Correlation with pharmacological properties and pathophysiology of envenomation.. Sci Rep. 7(1):17119.

Bordoloi NK, Bhagowati P, Chaudhuri MK, Mukherjee AK. 2016. Proteomics and Metabolomics Analyses to Elucidate the Desulfurization Pathway of Chelatococcus sp.[Mass Spectrometry]. PLoS One. 11(4):e0153547.

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Rangiah K, Palakodeti D. 2018. Quantification of Neurotransmitters from Intact and Regenerating Planarians Using UHPLC-MS/SRM Method. [Mass Spectrometry - Metabolomics Facility]. Methods Mol Biol. 1774:555-570.

Natarajan N, Ramakrishnan P, Lakshmanan V, Palakodeti D, Rangiah K. 2015. A quantitative metabolomics peek into planarian regeneration. [Mass spectrometry - Metabolomics]. Analyst. 140(10):3445-64.

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Yang G, Humphrey SJ, Murashige DS, Francis D, Wang Q-P, Cooke KC, Neely G, James DE. 2018. RagC phosphorylation autoregulates mTOR complex 1. [Drosophila Facility]. EMBO J.

Babu P, Victor XV, Raman K, Kuberan B. 2015. A rapid, nonradioactive assay for measuring heparan sulfate C-5 epimerase activity using hydrogen/deuterium exchange-mass spectrometry.. Methods Mol Biol. 1229:209-19.

Yadav S, Garner K, Georgiev P, Li M, Gomez-Espinosa E, Panda A, Mathre S, Okkenhaug H, Cockcroft S, Raghu P. 2015. RDGBα, a PtdIns-PtdOH transfer protein, regulates G-protein-coupled PtdIns(4,5)P2 signalling during Drosophila phototransduction.[Drosophila Facility]. J Cell Sci. 128(17):3330-44.

Dash PKumar, Pattabiraman C, Tandel K, Sharma S, Kumar JS, Siddappa S, Gowda M, Krishna S, Parida M. 2018. Recovery of Five Complete Influenza A(H1N1)pdm09 Genome Sequences from the 2015 Influenza Outbreak in India by Metagenomic Sequencing. [Next Gen Genomics Facility]. Genome Announc. 6(26)

Kumar V, Kleffmann T, Hampton MB, Cannell MB, Winterbourn CC. 2013. Redox proteomics of thiol proteins in mouse heart during ischemia/reperfusion using ICAT reagents and mass spectrometry.. Free Radic Biol Med. 58:109-17.

Lal A, Krishna S, Seshasayee ASai Narain. 2018. Regulation of Global Transcription in by Rsd and 6S RNA. [Next Gen Genomics Facility]. G3 (Bethesda).

Kumar R, Chotaliya M, Vuppala S, Auradkar A, Palasamudrum K, Joshi R. 2015. Role of Homothorax in region specific regulation of Deformed in embryonic neuroblasts.. Mech Dev. 138 Pt 2:190-7.

Bharatham N, Slavish PJ, Young BM, Shelat AA. 2018. The role of ZA channel water-mediated interactions in the design of bromodomain-selective BET inhibitors.. J Mol Graph Model. 81:197-210.

Toshniwal AG, Gupta S, Mandal L, Mandal S. 2019. ROS Inhibits Cell Growth by Regulating 4EBP and S6K, Independent of TOR, during Development [Transgenic Fly Facility].. Dev Cell. 49(3):473-489.e9.

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Rangiah K. 2014. Sensitive UHPLC-MS/SRM method for quantifying olanzapine metabolites and degradation products from sera. Anal. Methods. 6:5250-5257.

Sarkar A, Mukundan N, Sowndarya S, Dubey VKumar, Babu R, Lakshmanan V, Rangiah K, Panicker MM, Palakodeti D, Subramanian SPeruvemba et al.. 2019. Serotonin is essential for eye regeneration in planaria Schmidtea mediterranea [Mass Spectrometry (Metabolomics) and Central Imaging & Flow Cytometry Facilities]. FEBS Lett.

Arora A, Patil V, Kundu P, Kondaiah P, Hegde AS, Arivazhagan A, Santosh V, Pal D, Somasundaram K. 2019. Serum biomarkers identification by iTRAQ and verification by MRM: S100A8/S100A9 levels predict tumor-stroma involvement and prognosis in Glioblastoma [Mass Spectrometry - Metabolomics Facility].. Sci Rep. 9(1):2749.

Nagarkoti S, Dubey M, Awasthi D, Kumar V, Chandra T, Kumar S, Dikshit M. 2018. S-Glutathionylation of p47phox sustains superoxide generation in activated neutrophils. [Mass Spectrometry Facility - Proteomics]. Biochim Biophys Acta. 1865(2):444-454.

Bheri M, Bhosle SM, Makandar R. 2019. Shotgun proteomics provides an insight into pathogenesis related proteins using anamorphic stage of the biotroph, Erysiphe pisi pathogen of garden pea [Mass Spectrometry Facility - Proteomics]. Microbiological Research.

Ghosh B, Mitra J, Chakraborty S, Bhattacharyya J, Chakraborty A, Sen SKumar, Neerathilingam M. 2015. Simple Detection Methods for Antinutritive Factor β-ODAP Present in Lathyrus sativus L. by High Pressure Liquid Chromatography and Thin Layer Chromatography. [Protein Technology Core]. PLoS One. 10(11):e0140649.

Vikram A, Lewarchik CM, Yoon J-Y, Naqvi A, Kumar S, Morgan GM, Jacobs JS, Li Q, Kim Y-R, Kassan M et al.. 2017. Sirtuin 1 regulates cardiac electrical activity by deacetylating the cardiac sodium channel.. Nat Med.

Kumar S, Kim Y-R, Vikram A, Naqvi A, Li Q, Kassan M, Kumar V*, Bachschmid MM, Jacobs JS, Kumar A et al.. 2017. Sirtuin1-regulated lysine acetylation of p66Shc governs diabetes-induced vascular oxidative stress and endothelial dysfunction.. Proc Natl Acad Sci U S A.

Toda H, Williams JA, Gulledge M, Sehgal A. 2019. A sleep-inducing gene, nemuri, links sleep and immune function in Drosophila [Transgenic Fly Facility]. Science. 363(6426):509-515.

Sn S, Pandurangi J, Murumalla R, Dj V, Garimella L, Acharya A, Rai S, Paul A, Yarreiphang H, Pillai MS et al.. 2019. Small molecule modulator of aggrephagy regulates neuroinflammation to curb pathogenesis of neurodegeneration [Discovery to Innovation Accelerator].. EBioMedicine.

Chaplot K, Pimpale L, Ramalingam B, Deivasigamani S, Kamat SS, Ratnaparkhi GS. 2019. SOD1 activity threshold and TOR signalling modulate VAP(P58S) aggregation via reactive oxygen species-induced proteasomal degradation in a model of amyotrophic lateral sclerosis. [High Throughput Screening Facility]. Dis Model Mech. 12(2)

Neerathilingam M, Mysore S, Gandham SHari A. 2014. Soni-removal of nucleic acids from inclusion bodies. [Protein Technology Core]. Biochem Biophys Res Commun. 448(1):45-9.

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