Publications

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Listed below are the Publications supported by Technology platforms at C-CAMP / Bangalore Life Science Cluster.

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Author [ Title(Desc)] Type Year
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Kumar S, Vikram S, Subramanian S, Raghava GPal Singh, Pinnaka AKumar.  2012.  Genome sequence of the halotolerant bacterium Imtechella halotolerans K1T. [Next Generation Genomics facility]. J Bacteriol. 194(14):3731.
Kumar S, Subramanian S, Raghava GPal Singh, Pinnaka AKumar.  2012.  Genome sequence of the marine bacterium Marinilabilia salmonicolor JCM 21150T. [Next Generation Genomics facility]. J Bacteriol. 194(14):3746.
Upadhyay AK, Chacko AR, Gandhimathi A, Ghosh P, Harini K, Joseph AP, Joshi AG, Karpe SD, Kaushik S, Kuravadi N et al..  2015.  Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties.[Mass spectrometry - Metabolomics]. BMC Plant Biol. 15:212.
Prabhakara S, Khedkar S, Shambat SMairpady, Srinivasan R, Basu A, Norrby-Teglund A, Seshasayee ASai Narain, Arakere G.  2013.  Genome sequencing unveils a novel sea enterotoxin-carrying PVL phage in Staphylococcus aureus ST772 from India. [Next Generation Genomics facility]. PLoS One. 8(3):e60013.
Nadiya F, Anjali N, Thomas J, , Sabu KK.  2018.  Genome-wide differential expression profiling in wild and cultivar genotypes of cardamom reveals regulation of key pathways in plant growth and development [Next Gen Genomics Facility]. Agri Gene. 8:18-27.
Tyagi A., Khan A., Thatte P., Ramakrishnan U..  2022.  Genome-wide SNP markers from fecal samples reveal anthropogenic impacts on connectivity: case of a small carnivore in the central Indian landscape [Next Gen Genomics Facility]. Animal Conservation.
Srinivasan R, Chandraprakash D, Krishnamurthi R, Singh P, Scolari VF, Krishna S, Seshasayee ASai Narain.  2013.  Genomic analysis reveals epistatic silencing of "expensive" genes in Escherichia coli K-12. [Next Generation Genomics facility]. Mol Biosyst. 9(8):2021-33.
Goyal R, Jerath G, Akhil R, Chandrasekharan A, Puppala ERao, Ponneganti S, Sarma A, Naidu VGM, Santhoshkumar TR, Ramakrishnan V.  2021.  Geometry encoded functional programming of tumor homing peptides for targeted drug delivery [Image Analysis Support]. J Control Release.
Bose R, Adiga SK, D'Souza F, Salian SR, Uppangala S, Kalthur G, Jain N, Radhakrishnan RA, Bhat N, Krishnamurthy H et al..  2012.  Germ cell abnormalities in streptozotocin induced diabetic mice do not correlate with blood glucose level.. J Assist Reprod Genet. 29(12):1405-13.
Babu P.  2014.  Glycans in regeneration.. ACS Chem Biol. 9(1):96-104.
Subramanian SPeruvemba, Lakshmanan V, Palakodeti D, Subramanian R.  2021.  Glycomic and glycotranscriptomic profiling of mucin-type O-glycans in planarian Schmidtea mediterranea [Mass Spectrometry - Glycomics]. Glycobiology.
Jose RC, Kanchal T, Louis B, Talukdar NC, Chowdhury D.  2023.  Grain Characteristics, Moisture, and Specific Peptides Produced by Ustilaginoidea virens Contribute to False Smut Disease in Rice (Oryza sativa L.) [Mass Spectrometry - Proteomics Facility]. Biomolecules. 13
Velmurugan G, Ramprasath T, Swaminathan K, Mithieux G, Rajendhran J, Dhivakar M, Parthasarathy A, Babu DDVenkates, Thumburaj LJohn, Freddy AJ et al..  2017.  Gut microbial degradation of organophosphate insecticides-induces glucose intolerance via gluconeogenesis. [Next Generation Genomics facility]. Genome Biol. 18(1):8.
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Yoganandham SThodhal, Ravindranath* RRajasree S, Sathyamoorthy G, Renuka RRajan, Lakshminarayanan A.  2019.  Hematite Nanoparticles: synthesis, characterization and aquatic ecotoxicity effects [Central Imaging and Flow Cytometry Facility]. Research Journal of Biotechnology. 14(6)
Siddiqui A, Badruddeen., Akhtar J, MS SUddin, S C, Khan MIrfan, Khalid M.  2018.  Highly Sensitive LC-MS/MS-ESI method Development for the Determination of 5,7-dihydroxyflavone in Mouse Plasma and Pharmacokinetic Study in Lean and Diet Induced Obese Mice [High Throughput Screening Facility].. Der Pharmacia Lettre. 10(11)
Naik T, Sharda M, P LC, Virbhadra K, Pandit A.  2023.  High-quality single amplicon sequencing method for illumina MiSeq platform using pool of 'N' (0-10) spacer-linked target specific primers without PhiX spike-in [Next Gen Genomics Facility (INT)]. BMC Genomics. 24(1):141.
Ghosh N, Bakshi A, Khandelwal R, Rajan SGovinda, Joshi R.  2019.  The Hox gene uses Doublesex as a cofactor to promote neuroblast apoptosis in the central nervous system [Transgenic Fly Facility]. Development. 146(16)
Surendran H, Nandakumar S, Pal R.  2020.  Human induced pluripotent stem cell-derived lung epithelial system for SARS-CoV-2 infection modeling and its potential in drug repurposing [Eyestem Research Pvt. Ltd., a C-CAMP Startup]. Stem Cells Dev.
Jakkala K, Ajitkumar P.  2019.  Hypoxic Non-replicating Persistent Develops Thickened Outer Layer That Helps in Restricting Rifampicin Entry [Electron Microscopy Facility]. Front Microbiol. 10:2339.
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Sharmila GRamachandr, Halami PMotiram, Venkateswaran G.  2018.  Identification and characterization of a calcium dependent bacillopeptidase from Bacillus subtilis CFR5 with novel kunitz trypsin inhibitor degradation activity. [Mass Spectrometry Facility - Proteomics]. Food Res Int. 103:263-272.
Anjali N., Nadiya F., Thomas J, Sabu K.K.  2018.  Identification and characterization of drought responsive microRNAs and their target genes in cardamom (Elettaria cardamomum Maton) [Next Gen Genomics Facility]. Plant Growth Regulation.
Lakshmi S, Nair G, Kumari S, Gnana S, Vincent P.  2022.  Identification and molecular characterization of drug targets of methicillin resistant Staphylococcus aureus [Mass Spectrometry - Proteomics]. Journal of Applied and Natural Science. 14(4)
Bhowmik P, Bharatham N, Murakami S, Ramachandran V, Datta S.  2023.  Identification of key amino acid residues in OqxB mediated efflux of fluoroquinolones using site-directed mutagenesis [Bugworks Research Pvt. Ltd., a C-CAMP Startup]. Res Microbiol. :104039.
Subramanian SPeruvemba, Babu P, Palakodeti D, Subramanian R.  2018.  Identification of multiple isomeric core chitobiose-modified high-mannose and paucimannose -glycans in the planarian. [Mass Spectrometry Facility - Glycomics (INT)]. J Biol Chem. 293(18):6707-6720.
Kaur B, Kumar B.T.Naveen, Tyagi A, Holeyappa SAdmane, Singh NKumar.  2021.  Identification of novel vaccine candidates in the whole-cell Aeromonas hydrophila biofilm vaccine through reverse vaccinology approach [Mass Spectrometry - Proteomics Facility]. Fish & Shellfish Immunology. 114:132-141.

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