Publications

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Listed below are the Publications supported by Technology platforms at C-CAMP / Bangalore Life Science Cluster.

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Author Title [ Type(Asc)] Year
Journal Article
Bala M, Kumar S, Raghava GPal Singh, Mayilraj S.  2013.  Draft Genome Sequence of Rhodococcus qingshengii Strain BKS 20-40. (Next Generation Genomics). Genome Announc. 1(2):e0012813.
Kaur N, Kumar S, Bala M, Raghava GPal Singh, Mayilraj S.  2013.  Draft Genome Sequence of Amycolatopsis decaplanina Strain DSM 44594T. [Next Generation Genomics facility]. Genome Announc. 1(2):e0013813.
Singh NKumar, Kumar S, Raghava GPal Singh, Mayilraj S.  2013.  Draft Genome Sequence of Acinetobacter baumannii Strain MSP4-16. (Next Generation Genomics). Genome Announc. 1(2):e0013713.
Chakrabarti P, Kolay S, Yadav S, Kumari K, Nair A, Trivedi D, Raghu P.  2015.  A dPIP5K dependent pool of phosphatidylinositol 4,5 bisphosphate (PIP2) is required for G-protein coupled signal transduction in Drosophila photoreceptors.[Drosophila facility]. PLoS Genet. 11(1):e1004948.
Behring JB, Kumar V, Whelan SA, Chauhan P, Siwik DA, Costello CE, Colucci WS, Cohen RA, McComb ME, Bachschmid MM.  2014.  Does reversible cysteine oxidation link the Western diet to cardiac dysfunction? FASEB J. 28(5):1975-87.
Perumalsamy LR, Marcel N, Kulkarni S, Radtke F, Sarin A.  2012.  Distinct spatial and molecular features of notch pathway assembly in regulatory T cells.. Sci Signal. 5(234):ra53.
Narayanannair A, Nadiya F, Thomas J, Sabu K.  2017.  Discovery of MicroRNAs in Cardamom ( Elettaria cardamomum Maton) under Drought Stress. Dataset Papers in Science. 2017:1-4.
Mallik AKumar, N Achyuthan S, Ganesh SR, Pal SP, Vijayakumar SP, Shanker K.  2019.  Discovery of a deeply divergent new lineage of vine snake (Colubridae: Ahaetuliinae: Proahaetulla gen. nov.) from the southern Western Ghats of Peninsular India with a revised key for Ahaetuliinae [Next Gen Genomics Facility].. PLoS One. 14(7):e0218851.
Surendran H, Rajamoorthy M, Pal R.  2019.  Differentiating Human Induced Pluripotent Stem Cells (iPSCs) Into Lung Epithelial Cells. [Eyestem, a C-CAMP Startup]. Curr Protoc Stem Cell Biol. :e86.
Boya R, Yadavalli ADevi, Nikhat S, Kurukuti S, Palakodeti D, Pongubala JMR.  2017.  Developmentally regulated higher-order chromatin interactions orchestrate B cell fate commitment.. Nucleic Acids Res.
Gupta S, Marcel N, Talwar S, Garg M, R I, Perumalsamy LR, Sarin A, Shivashankar GV.  2012.  Developmental heterogeneity in DNA packaging patterns influences T-cell activation and transmigration.. PLoS One. 7(9):e43718.
Singh J, Sabareesan AT, Mathew MK, Udgaonkar JB.  2012.  Development of the structural core and of conformational heterogeneity during the conversion of oligomers of the mouse prion protein to worm-like amyloid fibrils.. J Mol Biol. 423(2):217-31.
Ghatak A, Bharatham N, Shanbhag AP, Datta S, Venkatraman J.  2017.  Delineating Substrate Diversity of Disparate Short-Chain Dehydrogenase Reductase from Debaryomyces hansenii.. PLoS One. 12(1):e0170202.
Krishna S, Nair A, Cheedipudi S, Poduval D, Dhawan J, Palakodeti D, Ghanekar Y.  2013.  Deep sequencing reveals unique small RNA repertoire that is regulated during head regeneration in Hydra magnipapillata. [Next Generation Genomics facility]. Nucleic Acids Res. 41(1):599-616.
Nadiya F, Anjali N, Thomas J, Gangaprasad A, Sabu KK.  2019.  Deep sequencing identified potential miRNAs involved in defence response, stress and plant growth characteristics of wild genotypes of cardamom [Next Gen Genomics Facility]. Plant Biol (Stuttg). 21(1):3-14.
Kumar R, Mohammad A, Saini RV, Chahal A, Wong C-M, Sharma D, Kaur S, Kumar V, Winterbourn CC, Saini AK.  2019.  Deciphering the in vivo redox behavior of human peroxiredoxins I and II by expressing in budding yeast [Mass Spectrometry - Proteomics].. Free Radic Biol Med. 145:321-329.
Neerathilingam M, Bairy SG, Mysore S.  2016.  Deciphering Mode of Action of Functionally Important Regions in the Intrinsically Disordered Paxillin (Residues 1-313) Using Its Interaction with FAT (Focal Adhesion Targeting Domain of Focal Adhesion Kinase). [Protein Technology Core]. PLoS One. 11(2):e0150153.
Nadiya F, Anjali N, Thomas J, Gangaprasad A, Sabu KK.  2017.  Data on identification of conserved and novel miRNAs in Elettaria cardamomum [Next Gen Genomics Facility]. Data Brief. 14:789-792.
Rangiah K, Palakodeti D.  2013.  Comprehensive analysis of neurotransmitters from regenerating planarian extract using an ultrahigh-performance liquid chromatography/mass spectrometry/selected reaction monitoring method.. Rapid Commun Mass Spectrom. 27(21):2439-52.
Kuravadi NA, Yenagi V, Rangiah K, Mahesh HB, Rajamani A, Shirke MD, Russiachand H, Loganathan RMalarini, Lingu CShankara, Siddappa S et al..  2015.  Comprehensive analyses of genomes, transcriptomes and metabolites of neem tree. [Mass spectrometry - Metabolomics]. PeerJ. 3:e1066.
Dias M, Pattabiraman C, Siddappa S, Gowda M, Shet A, Smith D, Muehlemann B, Tamma K, Solomon T, Jones T et al..  2018.  Complete assembly of a dengue virus type 3 genome from a recent genotype III clade by metagenomic sequencing of serum.[Next Gen Genomics Facility]. Wellcome Open Res. 3:44.
Mukherjee AK, Bhagowati P, Biswa BBahadur, Chanda A, Kalita B.  2017.  A comparative intracellular proteomic profiling of Pseudomonas aeruginosa strain ASP-53 grown on pyrene or glucose as sole source of carbon and identification of some key enzymes of pyrene biodegradation pathway.. J Proteomics. 167:25-35.
Tuikhar N, Keisam S, Labala RKumar, Ramakrishnan P, Arunkumar MCha, Ahmed G, Biagi E, Jeyaram K.  2019.  Comparative analysis of the gut microbiota in centenarians and young adults shows a common signature across genotypically non-related populations [Mass Spectrometry - Metabolomics Facility].. Mech Ageing Dev. 179:23-35.
Khandelwal R, Sipani R, Rajan SGovinda, Kumar R, Joshi R.  2017.  Combinatorial action of Grainyhead, Extradenticle and Notch in regulating Hox mediated apoptosis in Drosophila larval CNS.. PLoS Genet. 13(10):e1007043.
Kumar V, A AKumar, Sanawar R, Jaleel A, Kumar TRSanthosh, Kartha CC.  2019.  Chronic Pressure Overload Results in Deficiency of Mitochondrial Membrane Transporter ABCB7 Which Contributes to Iron Overload, Mitochondrial Dysfunction, Metabolic Shift and Worsens Cardiac Function [Mass Spectrometry - Metabolomics Facility].. Sci Rep. 9(1):13170.

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